Institut Charles Sadron

2023

Journal articles

titre: Rotational and translational drags of a Janus particle close to a wall and a lipid membrane
auteur: Vaibhav Sharma, Florent Fessler, Fabrice Thalmann, Carlos Marques, Antonio Stocco
article: Journal of Colloid and Interface Science, 2023, 652, pp.2159-2166. ⟨10.1016/j.jcis.2023.09.026⟩
Resume_court: Hypothesis: Measuring rotational and translational Brownian motion of single spherical particles rev .....
typdoc: Journal articles
DOI: DOI : 10.1016/j.jcis.2023.09.026
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2022

Journal articles

titre: Stress overshoot, hysteresis, and the Bauschinger effect in sheared dense colloidal suspensions
auteur: Dmytro Kushnir, Céline Ruscher, Eckhard Bartsch, Fabrice Thalmann, Pascal Hebraud
article: Physical Review E , 2022, 106 (3), pp.034611. ⟨10.1103/PhysRevE.106.034611⟩
Resume_court: The mechanical non-linear response of dense Brownian suspensions of polymer gel particles is studied .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevE.106.034611
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titre: Perturbing the catenoid: stability and mechanical properties of non-axisymmetric minimal surfaces
auteur: Friedrich Walzel, Alice Requier, Kevin Boschi, Jean Farago, Philippe Fuchs, Fabrice Thalmann, Wiebke Drenckhan, Pierre Muller, Thierry Charitat
article: Physical Review E , 2022, 106 (1), pp.014803. ⟨10.1103/PhysRevE.106.014803⟩
Resume_court: Minimal surface problems arise naturally in many soft matter systems whose free energies are dominat .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevE.106.014803
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2021

Journal articles

titre: Rheology of sliding leaflets in coarse-grained DSPC lipid bilayers
auteur: Othmene Benazieb, Claire Loison, Fabrice Thalmann
article: Physical Review E , 2021, 104 (5), pp.054802. ⟨10.1103/PhysRevE.104.054802⟩
Resume_court: Amphiphilic lipid bilayers modify the friction properties of the surfaces on top of which they are d .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevE.104.054802
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titre: Ripple-like instability in the simulated gel phase of finite size phosphocholine bilayers
auteur: Vivien Walter, Céline Ruscher, Adrien Gola, Carlos M Marques, Olivier Benzerara, Fabrice Thalmann
article: Biochimica et Biophysica Acta:Biomembranes, 2021, 1863 (11), pp.183714. ⟨10.1016/j.bbamem.2021.183714⟩
Resume_court: Atomistic molecular dynamics simulations have reached a degree of maturity that makes it possible to .....
typdoc: Journal articles
DOI: DOI : 10.1016/j.bbamem.2021.183714
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titre: Molecular organization in hydroperoxidized POPC bilayers
auteur: Helena Junqueira, André Pierre Schroder, Fabrice Thalmann, Andrey Klymchenko, Yves Mély, Mauricio S Baptista, Carlos M Marques
article: Biochimica et Biophysica Acta:Biomembranes, 2021, 1863 (10), pp.183659. ⟨10.1016/j.bbamem.2021.183659⟩
typdoc: Journal articles
DOI: DOI : 10.1016/j.bbamem.2021.183659
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titre: MLLPA: A Machine Learning-assisted Python module to study phase-specific events in lipid membranes
auteur: Vivien Walter, Céline Ruscher, Olivier Benzerara, Fabrice Thalmann
article: Journal of Computational Chemistry, 2021, ⟨10.1002/jcc.26508⟩
Resume_court: MLLPA is a new Python 3 module developed to analyse phase domains in a lipid membrane based on lipid .....
typdoc: Journal articles
DOI: DOI : 10.1002/jcc.26508
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titre: Accumulation of styrene oligomers alters lipid membrane phase order and miscibility
auteur: Mattia Morandi, Monika Kluzek, Jean Wolff, André Pierre Schroder, Fabrice Thalmann, Carlos Marques
article: Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), pp.e2016037118. ⟨10.1073/pnas.2016037118⟩
Resume_court: Growth of plastic waste in the natural environment, and in particular in the oceans, has raised the .....
typdoc: Journal articles
DOI: DOI : 10.1073/pnas.2016037118
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2020

Journal articles

titre: A machine learning study of the two states model for lipid bilayer phase transitions
auteur: Carlos M. Marques, Fabrice Thalmann, Vivien Walter, Céline Ruscher, Olivier Benzarara
article: Physical Chemistry Chemical Physics, 2020, 22 (34), pp.19147-19154. ⟨10.1039/D0CP02058C⟩
typdoc: Journal articles
DOI: DOI : 10.1039/D0CP02058C
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titre: Fluid bilayer phase in aqueous mixtures of fatty alcohol and cationic surfactant
auteur: Tiago Espinosa, Fabien Leonforte, Luc Nicolas-Morgantini, Anne-Laure Fameau, Bernard Querleux, Fabrice Thalmann, Carlos M. Marques
article: Physical Review Research, 2020, 2 (1), pp.013075. ⟨10.1103/PhysRevResearch.2.013075⟩
Resume_court: Lamellar gel networks are creamy formulations extensively used in cosmetics and pharmaceutics. The b .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevResearch.2.013075
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titre: Coarse-Grain Simulations of Solid Supported Lipid Bilayers with Varying Hydration Levels
auteur: Florian Benedetti, Li Fu, Fabrice Thalmann, Thierry Charitat, Anne Rubin, Claire Loison
article: Journal of Physical Chemistry B, 2020, 124 (38), pp.8287-8298. ⟨10.1021/acs.jpcb.0c03913⟩
Resume_court: Supported lipid bilayers (SLBs) are a very popular system for the study of biomimetic membranes. Und .....
typdoc: Journal articles
DOI: DOI : 10.1021/acs.jpcb.0c03913
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Preprints, Working Papers, ...

titre: A machine learning assessment of the two states model for lipid bilayer phase transitions
auteur: Viven Walter, Céline Ruscher, Olivier Benzerara, Carlos M. Marques, Fabrice Thalmann
article: 2020
Resume_court: We have adapted a set of classification algorithms, also known as Machine Learning, to the identific .....
typdoc: Preprints, Working Papers, ...
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2019

Journal articles

titre: Interaction of Giant Unilamellar Vesicles with the Surface Nanostructures on Dragonfly Wings
auteur: Samuel Cheeseman, Vi Khanh Truong, Vivien Walter, Fabrice Thalmann, Carlos M. Marques, Eric Hanssen, Jitraporn Vongsvivut, Mark J Tobin, Vladimir Baulin, Saulius Juodkazis, Shane Maclaughlin, Gary Bryant, Russell J Crawford, Elena A. Ivanova
article: Langmuir, 2019, 35 (6), pp.2422-2430. ⟨10.1021/acs.langmuir.8b03470⟩
Resume_court: The waxy epicuticle of dragonfly wings contains a unique nanostructured pattern that exhibits bacter .....
typdoc: Journal articles
DOI: DOI : 10.1021/acs.langmuir.8b03470
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titre: Coarse-Grained Model of Oxidized Membranes and Their Interactions with Nanoparticles of Various Degrees of Hydrophobicity
auteur: Chan-Fei Su, Holger Merlitz, Fabrice Thalmann, Carlos M. Marques, Jens-Uwe Sommer
article: Journal of Physical Chemistry C, 2019, 123 (11), pp.6839-6848. ⟨10.1021/acs.jpcc.8b11909⟩
Resume_court: We investigate the consequences of lipid peroxidation on the permeation properties of membranes comp .....
typdoc: Journal articles
DOI: DOI : 10.1021/acs.jpcc.8b11909
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2018

Journal articles

titre: Velocity of lateral drying fronts in film formation by drying of colloidal dispersions. A 2D simulation
auteur: M. Nassar, A. Gromer, F. Thalmann, P. Hébraud, Y. Holl
article: Journal of Colloid and Interface Science, 2018, 511, pp.424-433. ⟨10.1016/j.jcis.2017.10.010⟩
typdoc: Journal articles
DOI: DOI : 10.1016/j.jcis.2017.10.010
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titre: Permeability of DOPC bilayers under photoinduced oxidation: Sensitivity to photosensitizer
auteur: Isabel O L Bacellar, Mauricio S Baptista, Helena C Junqueira, Mark Wainwright, Fabrice Thalmann, Carlos M. Marques, André P Schroder
article: Biochimica et Biophysica Acta:Biomembranes, 2018, 1860 (11), pp.2366-2373. ⟨10.1016/j.bbamem.2018.06.001⟩
Resume_court: The modification of lipid bilayer permeability is one of the most striking yet poorly understood phy .....
typdoc: Journal articles
DOI: DOI : 10.1016/j.bbamem.2018.06.001
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titre: DPPC Bilayers in Solutions of High Sucrose Content
auteur: Mattia Morandi, Mathieu Sommer, Monika Kluzek, Fabrice Thalmann, André P. Schroder, Carlos M. Marques
article: Biophysical Journal, 2018, 114 (9), pp.2165-2173. ⟨10.1016/j.bpj.2018.04.003⟩
Resume_court: The properties of lipid bilayers in sucrose solutions have been intensely scrutinized over recent de .....
typdoc: Journal articles
DOI: DOI : 10.1016/j.bpj.2018.04.003
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titre: Kinetic evolution of DOPC lipid bilayers exposed to α-cyclodextrins
auteur: Monika Kluzek, Marc Schmutz, Carlos M. Marques, Fabrice Thalmann
article: Soft Matter, 2018, 14 (28), pp.5800-5810. ⟨10.1039/C8SM01013G⟩
Resume_court: Cyclodextrins are cyclic oligosaccharides capable of forming inclusion complexes with a variety of m .....
typdoc: Journal articles
DOI: DOI : 10.1039/C8SM01013G
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2017

Journal articles

titre: Simulation of Vertical Surfactant Distributions in Drying Latex Films
auteur: A. Gromer, F. Thalmann, P. Hébraud, Y. Holl
article: Langmuir, 2017, 33 (2), pp.561-572. ⟨10.1021/acs.langmuir.6b03913⟩
typdoc: Journal articles
DOI: DOI : 10.1021/acs.langmuir.6b03913
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titre: Horizontal drying fronts in films of colloidal dispersions: influence of hydrostatic pressure and collective diffusion
auteur: M. Nassar, A. Gromer, D. Favier, F. Thalmann, P. Hébraud, Y. Holl
article: Soft Matter, 2017, 13 (48), pp.9162-9173. ⟨10.1039/C7SM01334E⟩
Resume_court: The origin and time evolution of heterogeneities in drying colloidal films is still a matter of deba .....
typdoc: Journal articles
DOI: DOI : 10.1039/C7SM01334E
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titre: Influence of a pH-sensitive polymer on the structure of monoolein cubosomes
auteur: Monika Kluzek, Arwen Tyler, Shiqi Wang, Rongjun Chen, Carlos Marques, Fabrice Thalmann, John Seddon, Marc Schmutz
article: Soft Matter, 2017, 13 (41), pp.7571-7577. ⟨10.1039/C7SM01620D⟩
Resume_court: Cubosomes consist in submicron size particles of lipid bicontinuous cubic phases stabilized by surfa .....
typdoc: Journal articles
DOI: DOI : 10.1039/C7SM01620D
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Conference papers

titre: La Nuit des ondes gravitationnelles : a multi-site outreach event about gravitational waves
auteur: Nicolas Arnaud, Caroline Andreazza, Marie Lauvergeon-Gourdon, Sophie Rémy, Fabrice Thalmann, Guy Wormser, Loïc Bommersbach, Jonathan Braine, Eric Chassande-Motin, Christophe Chatelain, Arnaud Cuisset, Jérôme Degallaix, Samuel Deléglise, Sophie Félix, Valérie Frois, Titaina Gibert, Julien Guillaume, Daniel Hennequin, Stavros Katsanevas, Fabien Kéfélian, Frédérique Marion, Séverine Pérus, David Smith, Simon Villain-Guillot
article: The European Physical Society Conference on High Energy Physics (EPS-HEP) 2017, Jul 2017, Venise, Italy
Resume_court: On Monday March 20th 2017, an outreach event dedicated to the gravitational waves and their recent d .....
typdoc: Conference papers
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2016

Journal articles

titre: Peroxidised phospholipid bilayers: insight from coarse-grained molecular dynamics simulations
auteur: Yachong Guo, Vladimir Baulin, Fabrice Thalmann
article: Soft Matter, 2016, 12 (1), pp.263-271. ⟨10.1039/C5SM01350J⟩
Resume_court: An original coarse-grained model for peroxidised phospholipids is presented, based on the MARTINI li .....
typdoc: Journal articles
DOI: DOI : 10.1039/C5SM01350J
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2015

Journal articles

titre: Simulation of Latex Film Formation Using a Cell Model in Real Space: Vertical Drying
auteur: A. Gromer, M. Nassar, F. Thalmann, P. Hébraud, Y. Holl
article: Langmuir, 2015, 31 (40), pp.10983-10994. ⟨10.1021/acs.langmuir.5b02845⟩
typdoc: Journal articles
DOI: DOI : 10.1021/acs.langmuir.5b02845
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2014

Journal articles

titre: Two-dimensional polymeric liquids and polymer stars: learning from conflicting theories
auteur: Albert Johner, Fabrice Thalmann, Jörg Baschnagel, Hendrik Meyer, Sergei Obukhov, Joachim Wittmer
article: Journal of Statistical Mechanics: Theory and Experiment, 2014, 2014 (4), pp.P04024. ⟨10.1088/1742-5468/2014/04/P04024⟩
Resume_court: We discuss systems for which two carefully derived, yet conflicting, theories coexisted. Dense polym .....
typdoc: Journal articles
DOI: DOI : 10.1088/1742-5468/2014/04/P04024
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titre: Physical Damage on Giant Vesicles Membrane as a Result of Methylene Blue Photoirradiation
auteur: Omar Mertins, Isabel o.L. Bacellar, Fabrice Thalmann, Carlos m. Marques, Maurício s. Baptista, Rosangela Itri
article: Biophysical Journal, 2014, 106 (1), pp.162-171. ⟨10.1016/j.bpj.2013.11.4457⟩
typdoc: Journal articles
DOI: DOI : 10.1016/j.bpj.2013.11.4457
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2011

Journal articles

titre: Lipid bilayer adhesion on sparse DNA carpets: Theoretical analysis of membrane deformations induced by single-end-grafted polymers
auteur: F. Thalmann, V. Billot, C. Marques
article: Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2011, 83 (6), pp.061922. ⟨10.1103/PhysRevE.83.061922⟩
Resume_court: We consider a single end-grafted polymer chain covered by a membrane in contact with a flat and rigi .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevE.83.061922
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titre: Thermodynamic Approach to Phase Coexistence in Ternary Phospholipid-Cholesterol Mixtures
auteur: Jean Wolff, Carlos Marques, Fabrice Thalmann
article: Physical Review Letters, 2011, 106, pp.128104. ⟨10.1103/PhysRevLett.106.128104⟩
Resume_court: We introduce a simple and predictive model for determining the phase stability of ternary phospholip .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevLett.106.128104
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2010

Journal articles

titre: Enhanced shear separation for chiral magnetic colloidal aggregates
auteur: C. Mendoza, C. Marques, F. Thalmann
article: Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2010, 82 (6), pp.060401. ⟨10.1103/PhysRevE.82.060401⟩
Resume_court: We study the designing principles of the simplest colloidal propeller, an architecture built from fo .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevE.82.060401
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titre: Scraping and Stapling of End-Grafted DNA Chains by a Bioadhesive Spreading Vesicle to Reveal Chain Internal Friction and Topological Complexity
auteur: Gi-Moon Nam, Marie Laure Hisette, Yuting Liang Sun, Thomas Gisler, Albert Johner, Fabrice Thalmann, André Schroder, Carlos Marques, Nam-Kyung Lee
article: Physical Review Letters, 2010, 105 (8), ⟨10.1103/PhysRevLett.105.088101⟩
Resume_court: Stained end-grafted DNA molecules about 20 μm long are scraped away and stretched out by the spread .....
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevLett.105.088101
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titre: Surfactant Distribution in Waterborne Acrylic Films. 1. Bulk Investigation
auteur: Céline Arnold, Fabrice Thalmann, Carlos Marques, Pascal Marie, Yves Holl
article: Journal of Physical Chemistry B, 2010, 114 (28), pp.9135-9147. ⟨10.1021/jp103347n⟩
Resume_court: The distribution of an anionic surfactant, sodium dodecyl sulfate (SDS), in waterborne acrylic films .....
typdoc: Journal articles
DOI: DOI : 10.1021/jp103347n
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titre: A schematic model for molecular affinity and binding with Ising variables
auteur: Fabrice Thalmann
article: European Physical Journal E: Soft matter and biological physics, 2010, 31 (4), pp.441-454. ⟨10.1140/epje/i2010-10600-9⟩
Resume_court: After discussing the relevance of statistical physics in molecular recognition processes, we present .....
typdoc: Journal articles
DOI: DOI : 10.1140/epje/i2010-10600-9
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2009

Journal articles

titre: Fast algorithms for classical X→0 diffusion-reaction processes
auteur: Fabrice Thalmann, Nam-Kyung Lee
article: J Chem Phys, 2009, 130 (7), pp.074102. ⟨10.1063/1.3072706⟩
Resume_court: The Doi formalism treats a reaction-diffusion process as a quantum many-body problem. We use this se .....
typdoc: Journal articles
DOI: DOI : 10.1063/1.3072706
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titre: Fast algorithms for classical X—>0 diffusion-reaction processes
auteur: Fabrice Thalmann, Nam-Kyung Lee
article: The Journal of Chemical Physics, 2009, 130 (7), pp.074102
typdoc: Journal articles
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2008

Journal articles

titre: Measuring the Kinetics of Biomolecular Recognition with Magnetic Colloids
auteur: Laetitia Cohen-Tannoudji, Emanuel Bertrand, Jean Baudry, Caroline Robic, Cécile Goubault, Marie Pellissier, Albert Johner, Fabrice Thalmann, Nam-Kyung Lee, Carlos M. Marques, Jérôme Bibette
article: Physical Review Letters, 2008, 100, pp.108301. ⟨10.1103/PhysRevLett.100.108301⟩
typdoc: Journal articles
DOI: DOI : 10.1103/PhysRevLett.100.108301
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titre: Ligand-Receptor Interactions in Chains of Colloids: When Reactions Are Limited by Rotational Diffusion
auteur: Nam-Kyung Lee, Albert Johner, Fabrice Thalmann, Laetitia Cohen-Tannoudji, Emanuel Bertrand, Jean Baudry, Jérôme Bibette, Carlos M. Marques
article: Langmuir, 2008, 24, pp.1296. ⟨10.1021/la701639n⟩
typdoc: Journal articles
DOI: DOI : 10.1021/la701639n
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2007

Journal articles

titre: Collision induced spatial organization of microtubules
auteur: Vladimir A. Baulin, Carlos M. Marques, Fabrice Thalmann
article: Biophysical Chemistry, 2007, 128 (2-3), pp.231. ⟨10.1016/j.bpc.2007.04.009⟩
Resume_court: The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls .....
typdoc: Journal articles
DOI: DOI : 10.1016/j.bpc.2007.04.009
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titre: Trotter derivation of algorithms for Brownian and Dissipative Particle Dynamics.
auteur: F. Thalmann, J. Farago
article: The Journal of Chemical Physics, 2007, 127 (12), ⟨10.1063/1.2764481⟩
typdoc: Journal articles
DOI: DOI : 10.1063/1.2764481
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2003

Journal articles

titre: Predictions and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.
auteur: A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert
article: Proceedings of the National Academy of Sciences of the United States of America, 2003, 100 ((26)), pp.15310-15315
typdoc: Journal articles
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1998

Journal articles

titre: Activated drift motion of a classical particle with a dynamical pinning effect
auteur: F. Thalmann
article: The European Physical Journal B: Condensed Matter and Complex Systems, 1998, 3 (4), pp.497-505. ⟨10.1007/s100510050340⟩
typdoc: Journal articles
DOI: DOI : 10.1007/s100510050340
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Institut Charles Sadron Membre

Fabrice Thalmann

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2011

2010

2009

2008

2007