Institut Charles Sadron MCUBE

Publications

2023 Sharma, V.; Fessler, F.; Thalmann, F.; Marques, C.M.; Stocco, A. Rotational and translational drags of a Janus particle close to a wall and a lipid membrane Dans : Journal Of Colloid And Interface Science,652(B) : 2159-2166 (2023) Article de journal

2022 Ruiz, P.A.S.; Ziebert, F.; Kulic, I.M. Physics of self-rolling viruses Dans : Physical Review E,105(5) : (2022) Article de journal

Zhang, Y.; Liu, D.; Zhang, Y.; Guo, Y.; Li, W.; Thalmann, F. Coarse-grained description of monounsaturated peroxidized phospholipid bilayers Dans : Journal Of Chemical Physics,157(8) : (2022) Article de journal

Walzel, F.; Requier, A.; Boschi, K.; Farago, J.; Fuchs, P.; Thalmann, F.; Drenckhan, W.; Muller, P.; Charitat, T. Perturbing the catenoid: Stability and mechanical properties of nonaxisymmetric minimal surfaces Dans : Physical Review E,106(1) : (2022) Article de journal

2021 Benazieb, O.; Loison, C.; Thalmann, F. Rheology of sliding leaflets in coarse-grained DSPC lipid bilayers Dans : Physical Review E,104(5) : (2021) Article de journal

Walter, V.; Ruscher, C.; Gola, A.; Marques, C.M.; Benzerara, O.; Thalmann, F. Ripple-like instability in the simulated gel phase of finite size phosphocholine bilayers Dans : Biochimica Et Biophysica Acta-Biomembranes,1863(11) : (2021) Article de journal

Junqueira, H.; Schroder, A.P.; Thalmann, F.; Klymchenko, A.; Mely, Y.; Baptista, M.S.; Marques, C.M. Molecular organization in hydroperoxidized POPC bilayers Dans : Biochimica Et Biophysica Acta-Biomembranes,1863(10) : (2021) Article de journal

Ziebert, F.; Kulic, I.M. How Influenza’s Spike Motor Works Dans : Physical Review Letters,126(21) : (2021) Article de journal

Walter, V.; Ruscher, C.; Benzerara, O.; Thalmann, F. MLLPA: A Machine Learning-assisted Python module to study phase-specific events in lipid membranes Dans : Journal Of Computational Chemistry,42(13) : 930-943 (2021) Article de journal

Morandi, I.M.; Kluzek, M.; Wolff, J.; Schroder, A.; Thalmann, F.; Marques, C.M. Accumulation of styrene oligomers alters lipid membrane phase order and miscibility Dans : Proceedings Of The National Academy Of Sciences Of The United States Of America,118(4) : (2021) Article de journal

Vagner, S.A.; Patlazhan, S.A.; Serra, C.A.; Funfschilling, D.; Kulichikhin, V.G. Dripping and jetting of semi-dilute polymer solutions co-flowing in co-axial capillaries Dans : Physics Of Fluids,33(6) : (2021) Article de journal

2020 Cuveillier, C.; Delaroche, J.; Seggio, M.; Gory-Faure, S.; Bosc, C.; Denarier, E.; Bacia, M.; Schoehn, G.; Mohrbach, H.; Kulic, I.; Andrieux, A.; Arnal, I.; Delphin, C. MAP6 is an intraluminal protein that induces neuronal microtubules to coil Dans : Science Advances,6(14) : eaaz4344 (2020) Article de journal

Walter, V.; Ruscher, C.; Benzerara, O.; Marques, C.M.; Thalmann, F. A machine learning study of the two states model for lipid bilayer phase transitions Dans : Physical Chemistry Chemical Physics,22(34) : 19147-19154 (2020) Article de journal

Benedetti, F.; Fu, L.; Thalmann, F.; Charitat, T.; Rubin, A.; Loison, C. Coarse-Grain Simulations of Solid Supported Lipid Bilayers with Varying Hydration Levels Dans : Journal Of Physical Chemistry B,124(38) : 8287-8298 (2020) Article de journal

Farago, J.; Charitat, T.; Bigot, A.; Schotter, R.; Kulic, I. Counterrotation of magnetic beads in spinning fields Dans : Physical Review E,102(4) : (2020) Article de journal

de Oliveira, T.E.; Leonforte, F.; Nicolas-Morgantini, L.; Fameau, A.-L.; Querleux, B.; Thalmann, F.; Marques, C.M. Fluid bilayer phase in aqueous mixtures of fatty alcohol and cationic surfactant Dans : Physical Review Research,2(1) : (2020) Article de journal

Bazir, A.; Baumann, A.; Ziebert, F.; Kulic, I.M. Dynamics of fiberboids Dans : Soft Matter,16(22) : 5210-5223 (2020) Article de journal

2019 Su, C.-F.; Merlitz, H.; Thalmann, F.; Marques, C.; Sommer, J.-U. Coarse-Grained Model of Oxidized Membranes and Their Interactions with Nanoparticles of Various Degrees of Hydrophobicity Dans : Journal Of Physical Chemistry C,123(11) : 6839-6848 (2019) Article de journal

Bouzar, L.; Mueller, M.M.; Messina, R.; Noeding, B.; Koester, S.; Mohrbach, H.; Kulic, I.M. Helical Superstructure of Intermediate Filaments Dans : Physical Review Letters,122(9) : (2019) Article de journal

Cheeseman, S.; Truong, V.K.; Walter, V.; Thalmann, F.; Marques, C.M.; Hanssen, E.; Vongsvivut, J.; Tobin, M.J.; Baulin, V.A.; Juodkazis, S.; Maclaughlin, S.; Bryant, G.; Crawford, R.J.; Ivanova, E.P. Interaction of Giant Unilamellar Vesicles with the Surface Nanostructures on Dragonfly Wings Dans : Langmuir,35(6) : 2422-2430 (2019) Article de journal

Morandi, M.I.; Thalmann, F.J.; Kluzek, M.; Schroder, A.P.; Marques, C.M. DPPC Lipid Melting Transition in Concentrated Sucrose Solutions Dans : Biophysical Journal,116(3, 1) : 79 (2019) Article de journal

2018 Bacellar, I.O.L.; Baptista, M.S.; Junqueira, H.C.; Wainwright, M.; Thalmann, F.; Marques, C.M.; Schroder, A.P. Permeability of DOPC bilayers under photoinduced oxidation: Sensitivity to photosensitizer Dans : Biochimica Et Biophysica Acta-Biomembranes,1860(11) : 2366-2373 (2018) Article de journal

Kluzek, M.; Schmutz, M.; Marques, C.M.; Thalmann, F. Kinetic evolution of DOPC lipid bilayers exposed to alpha-cyclodextrins Dans : Soft Matter,14(28) : 5800-5810 (2018) Article de journal

Baumann, A.; Sanchez-Ferrer, A.; Jacomine, L.; Martinoty, P.; Le Houerou, V.; Ziebert, F.; Kulic, I.M. Motorizing fibres with geometric zero-energy modes Dans : Nature Materials,17(6) : 523 (2018) Article de journal

Morandi, I.M.; Sommer, M.; Kluzek, M.; Thalmann, F.; Schroder, A.P.; Marques, C.M. DPPC Bilayers in Solutions of High Sucrose Content Dans : Biophysical Journal,114(9) : 2165-2173 (2018) Article de journal

Nassar, M.; Gromer, A.; Thalmann, F.; Hebraud, P.; Holl, Y. Velocity of lateral drying fronts in film formation by drying of colloidal dispersions. A 2D simulation Dans : Journal Of Colloid And Interface Science,511() : 424-433 (2018) Article de journal

2017 Nassar, M.; Gromer, A.; Favier, D.; Thalmann, F.; Hebraud, P.; Holl, Y. Horizontal drying fronts in films of colloidal dispersions: influence of hydrostatic pressure and collective diffusion Dans : Soft Matter,13(48) : 9162-9173 (2017) Article de journal

Becu, L.; Basler, M.; Kulic, M.L.; Kulic, I.M. Resonant reshaping of colloidal clusters on a current carrying wire Dans : European Physical Journal E,40(12) : (2017) Article de journal

Harlepp, S.; Thalmann, F.; Follain, G.; Goetz, J.G. Hemodynamic forces can be accurately measured in vivo with optical tweezers Dans : Molecular Biology Of The Cell,28(23, Si) : 3252-3260 (2017) Article de journal

Kluzek, M.; Tyler, A.I.I.; Wang, S.; Chen, R.; Marques, C.M.; Thalmann, F.; Seddon, J.M.; Schmutz, M. Influence of a pH-sensitive polymer on the structure of monoolein cubosomes Dans : Soft Matter,13(41) : 7571-7577 (2017) Article de journal

Malkin, A.Y.; Semakov, A.V.; Skvortsov, I.Y.; Zatonskikh, P.; Kulichikhin, V.G.; Subbotin, A.V.; Semenov, A.N. Spinnability of Dilute Polymer Solutions Dans : Macromolecules,50(20) : 8231-8244 (2017) Article de journal

Weinberger, A.; Walter, V.; MacEwan, S.R.; Schmatko, T.; Muller, P.; Schroder, A.P.; Chilkoti, A.; Marques, C.M. Cargo self-assembly rescues affinity of cell-penetrating peptides to lipid membranes Dans : Scientific Reports,7() : (2017) Article de journal

Gromer, A.; Thalmann, F.; Hebraud, P.; Holl, Y. Simulation of Vertical Surfactant Distributions in Drying Latex Films Dans : Langmuir,33(2) : 561-572 (2017) Article de journal

Sou, I.; Okamoto, R.; Komura, S.; Wolff, J. Coexistences of lamellar phases in ternary surfactant solutions Dans : Soft Materials,15(4) : 272-281 (2017) Article de journal

Kluzek, M.; Thalmann, F.; Schmutz, M.; Marques, C. Ring and Tails: Exploring the Intimacy of Cyclodextrin - Membrane Interactions Dans : Biophysical Journal,112(3, 1) : 223 (2017) Article de journal

2016 Bouzar, L.; Muller, M.M.; Gosselin, P.; Kulic, I.M.; Mohrbach, H. Squeezed helical elastica Dans : European Physical Journal E,39(11) : (2016) Article de journal

Wolff, J.; Komura, S.; Andelman, D. Budding transition of asymmetric two-component lipid domains Dans : Physical Review E,94(3) : (2016) Article de journal

Gosselin, P.; Mohrbach, H.; Kulic, I.M.; Ziebert, F. On complex, curved trajectories in microtubule gliding Dans : Physica D-Nonlinear Phenomena,318() : 105-111 (2016) Article de journal

Fierling, J.; Johner, A.; Kulic, I.M.; Mohrbach, H.; Mueller, M.M. How bio-filaments twist membranes Dans : Soft Matter,12(26) : 5747-5757 (2016) Article de journal

Guo, Y.; Baulin, V.A.; Thalmann, F. Peroxidised phospholipid bilayers: insight from coarse-grained molecular dynamics simulations Dans : Soft Matter,12(1) : 263-271 (2016) Article de journal

Baschnagel, J.; Meyer, H.; Wittmer, J.; Kulic, I.; Mohrbach, H.; Ziebert, F.; Nam, G.-M.; Lee, N.-K.; Johner, A. Semiflexible Chains at Surfaces: Worm-Like Chains and beyond Dans : Polymers,8(8) : (2016) Article de journal

2015 Ziebert, F.; Mohrbach, H.; Kulic, I.M. A nonequilibrium power balance relation for analyzing dissipative filament dynamics Dans : European Physical Journal E,38(12) : 1-8 (2015) Article de journal

Gromer, A.; Nassar, M.; Thalmann, F.; Hebraud, P.; Holl, Y. Simulation of Latex Film Formation Using a Cell Model in Real Space: Vertical Drying Dans : Langmuir,31(40) : 10983-10994 (2015) Article de journal

Ziebert, F.; Mohrbach, H.; Kulic, I.M. Why Microtubules Run in Circles: Mechanical Hysteresis of the Tubulin Lattice Dans : Physical Review Letters,114(14) : (2015) Article de journal

Li, Q.; Fuks, G.; Moulin, E.; Maaloum, M.; Rawiso, M.; Kulic, I.; Foy, J.T.; Giuseppone, N. Macroscopic contraction of a gel induced by the integrated motion of light-driven molecular motors Dans : Nature Nanotechnology,10(2) : 161-165 (2015) Article de journal

Wolff, J.; Komura, S.; Andelman, D. Budding of domains in mixed bilayer membranes Dans : Physical Review E,91(1) : (2015) Article de journal

Weysser, F.; Benzerara, O.; Johner, A.; Kulic, I.M. Topological energy storage of work generated by nanomotors Dans : Soft Matter,11(4) : 732-740 (2015) Article de journal

2014 Kulic, I.M.; Kulic, M.L. Theory of coherent van der Waals matter Dans : Physical Review E,90(6) : (2014) Article de journal

Fierling, J.; Mueller, M.M.; Mohrbach, H.; Johner, A.; Kulic, I.M. Crunching biofilament rings Dans : Epl,107(6) : (2014) Article de journal

Fierling, J.; Mohrbach, H.; Kulic, I.; Lee, N.-K.; Johner, A. Biofilaments as annealed semi-flexible copolymers Dans : Epl,106(5) : (2014) Article de journal

Johner, A.; Thalmann, F.; Baschnagel, J.; Meyer, H.; Obukhov, S.; Wittmer, J.P. Two-dimensional polymeric liquids and polymer stars: learning from conflicting theories Dans : Journal Of Statistical Mechanics-Theory And Experiment,() : (2014) Article de journal

Mertins, O.; Bacellar, I.O.L.; Thalmann, F.; Marques, C.M.; Baptista, M.S.; Itri, R. Physical Damage on Giant Vesicles Membrane as a Result of Methylene Blue Photoirradiation Dans : Biophysical Journal,106(1) : 162-171 (2014) Article de journal

Kahraman, O.; Mohrbach, H.; Mueller, M.M.; Kulic, I.M. Confotronic dynamics of tubular filaments Dans : Soft Matter,10(16) : 2836-2847 (2014) Article de journal

Schmatko, T.; Muller, P.; Maaloum, M. Surface charge effects on the 2D conformation of supercoiled DNA Dans : Soft Matter,10(15) : 2520-2529 (2014) Article de journal

2013 Kulic, I.M.; Kulic, M.L. Self-Assembly of Colloidal Superstructures in Coherently Fluctuating Fields Dans : Physical Review Letters,111(19) : (2013) Article de journal

Weinberger, A.; Tsai, F.-C.; Koenderink, G.H.; Schmidt, T.F.; Itri, R.; Meier, W.; Schmatko, T.; Schroeder, A.; Marques, C. Gel-Assisted Formation of Giant Unilamellar Vesicles Dans : Biophysical Journal,105(1) : 154-164 (2013) Article de journal

2012 Nam, G.-M.; Lee, N.-K.; Mohrbach, H.; Johner, A.; Kulic, I.M. Helices at interfaces Dans : Epl,100(2) : (2012) Article de journal

Lee, N.-K.; Schmatko, T.; Muller, P.; Maaloum, M.; Johner, A. Shape of adsorbed supercoiled plasmids: An equilibrium description Dans : Physical Review E,85(5, 1) : (2012) Article de journal

Mohrbach, H.; Kulic, I.M. Solvable model for polymorphic dynamics of biofilaments Dans : Physical Review E,85(3, 1) : (2012) Article de journal

Mohrbach, H.; Johner, A.; Kulic, I.M. Cooperative lattice dynamics and anomalous fluctuations of microtubules Dans : European Biophysics Journal With Biophysics Letters,41(2) : 217-239 (2012) Article de journal

2011 Thalmann, F.; Billot, V.; Marques, C.M. Lipid bilayer adhesion on sparse DNA carpets: Theoretical analysis of membrane deformations induced by single-end-grafted polymers Dans : Physical Review E,83(6, 1) : (2011) Article de journal

Wolff, J.; Marques, C.M.; Thalmann, F. Thermodynamic Approach to Phase Coexistence in Ternary Phospholipid-Cholesterol Mixtures Dans : Physical Review Letters,106(12) : (2011) Article de journal

2010 Mohrbach, H.; Johner, A.; Kulic, I.M. Tubulin Bistability and Polymorphic Dynamics of Microtubules Dans : Physical Review Letters,105(26) : (2010) Article de journal

Mendoza, C.I.; Marques, C.M.; Thalmann, F. Enhanced shear separation for chiral magnetic colloidal aggregates Dans : Physical Review E,82(6, 1) : (2010) Article de journal

Nam, G.; Hisette, M.L.; Sun, Y.L.; Gisler, T.; Johner, A.; Thalmann, F.; Schroeder, A.P.; Marques, C.M.; Lee, N.-K. Scraping and Stapling of End-Grafted DNA Chains by a Bioadhesive Spreading Vesicle to Reveal Chain Internal Friction and Topological Complexity Dans : Physical Review Letters,105(8) : (2010) Article de journal

Arnold, C.; Thalmann, F.; Marques, C.; Marie, P.; Holl, Y. Surfactant Distribution in Waterborne Acrylic Films. 1. Bulk Investigation Dans : Journal Of Physical Chemistry B,114(28) : 9135-9147 (2010) Article de journal

Thalmann, F. A schematic model for molecular affinity and binding with Ising variables Dans : European Physical Journal E,31(4) : 441-454 (2010) Article de journal

Sanchez, T.; Kulic, I.M.; Dogic, Z. Circularization, Photomechanical Switching, and a Supercoiling Transition of Actin Filaments Dans : Physical Review Letters,104(9) : (2010) Article de journal

2009 Thalmann, F.; Lee, N.-K. Fast algorithms for classical X -> 0 diffusion-reaction processes Dans : Journal Of Chemical Physics,130(7) : (2009) Article de journal

2008 Cohen-Tannoudji, L.; Bertrand, E.; Baudry, J.; Robic, C.; Goubault, C.; Pellissier, M.; Johner, A.; Thalmann, F.; Lee, N.K.; Marques, C.M.; Bibette, J. Measuring the kinetics of biomolecular recognition with magnetic colloids Dans : Physical Review Letters,100(10) : (2008) Article de journal

Geerts, N.; Schmatko, T.; Eiser, E. Clustering versus percolation in the assembly of colloids coated with long DNA Dans : Langmuir,24(9) : 5118-5123 (2008) Article de journal

2007 Thalmann, F.; Farago, J. Trotter derivation of algorithms for Brownian and dissipative particle dynamics Dans : Journal Of Chemical Physics,127(12) : (2007) Article de journal

Baulin, V.A.; Marques, C.M.; Thalmann, F. Collision induced spatial organization of microtubules Dans : Biophysical Chemistry,128(2-3) : 231-244 (2007) Article de journal